Jinkō

jinko

Discover and route Jinkō QSP and mechanistic-modeling requests to the public Jinkō skill that owns the work. Use when the user is starting a Jinkō session, asks what capability or skill to use, describes a multi-area modeling request, or has not yet identified the relevant jinko-* or jinko-task-* skill. This skill does not make scientific decisions, plan workflows, execute SDK calls, or decide that a task step is complete.

jinko-calibration-cmaes

Create, run, poll, and inspect results for Jinkō CMA-ES calibrations via the jinko-sdk: attach data tables and/or an advanced output set as fitness-function sources, set CMA-ES options and parameter priors, launch and monitor the run, and read performance/results payloads. Use whenever the user needs the SDK mechanics of building or driving a Calibration object. Do not use this skill for calibration business rules (defaults, diagnostics, deliverable rules). Do not use this skill for advanced output set / scoring design authoring — use jinko-output-set. Do not use this skill for data-table creation or validForFitnessFunction checks — use jinko-data-table. Do not use this skill for model or protocol authoring — use jinko-model / jinko-protocol. Do not use this skill for calibration-plan orchestration or iteration workflow.

jinko-calibration-subsampling

Create, validate, run, inspect, reuse, and edit Jinkō virtual-population subsampling designs with the jinko-sdk. Use whenever a completed Trial's simulated patients must be filtered or selected to match population-level targets, then emitted as a matched Vpop. This is SDK mechanics only: do not use it to choose scientific targets, filters, or algorithm settings; do not use it to create or run the source Trial, author a Vpop, or orchestrate a calibration workflow.

jinko-context

Explain core Jinkō context, navigation, version management, and domain language for agents and users. Use this skill whenever the user needs a mental model of Jinkō projects, folders, project items, snapshots, sources, extracts, protocols, trials, calibration, virtual populations, references, or modeling context; when translating between generic terms and Jinkō terminology; or when an agent needs orientation before navigating or modifying Jinkō artifacts. This skill is conceptual and terminology-focused; use dedicated jinko-* workflow skills for creating or editing specific artifacts.

jinko-data-table

Create or inspect Jinkō data tables via the jinko-sdk. Use this skill whenever the user wants to upload observed data for trial overlays or calibration objectives from CSV, SQLite, or pandas DataFrame; check data-table schema columns; inspect existing data tables; or verify metadata.public.validForFitnessFunction. Do not use this skill for output sets; use jinko-output-set for that.

jinko-document

Create or update a Jinkō document from markdown through the jinko-sdk, including headings, tables, code blocks, links to Jinkō project items, uploaded images, and links to existing Jinkō References. Use this skill whenever the user wants to turn local markdown into a Jinkō document, refresh an existing document from edited markdown, prepare markdown so Jinkō renders cards and images correctly, or cite existing project References.

jinko-model

Build or edit a Jinkō computational model (QSP/PK-PD) via the jinko-sdk: parameters, categorical parameters, compartments, species, ODEs, reactions, dosing events, algebraic rules, baseline checks, solving options, units, and component tags. Use this skill whenever the user wants to create a model from scratch, create an empty model, edit an existing model, add or modify components, apply input/source/output tags, configure unit checking, define model-level dosing events, validate diagnostics, or debug model sanity or simple_solve errors. Prefer editing existing models over recreating them. Do not use this skill for running trials; use jinko-trial for trial execution.

jinko-output-set

Create, inspect, validate, and incrementally edit Jinkō output sets via the jinko-sdk: simple output sets (measure designs) that list scalar measures derived from model outputs, and advanced output sets (scoring designs) that define constraints, scalars, and weighted objectives for scoring virtual populations. Validate scoring expressions and read diagnostics before attaching an output set elsewhere. Do not use this skill for attaching a simple or advanced output set to a trial and running it; use jinko-trial for that. Do not use this skill for data-table creation or fitness-function metadata; use jinko-data-table for that. Do not use this skill for calibration setup or CMA-ES options.

jinko-protocol

Design or edit multi-arm Jinkō protocol designs via the jinko-sdk. Use this skill whenever the user wants to compare doses, schedules, administration routes, treatment activation flags, or combinations of treatments by overriding model component values per arm. Protocol designs assign values to model-defined inputs; dosing functions, schedule parameterization, treatment activation logic, and administration-mode logic belong in the model. Use jinko-model when those functions or inputs do not exist yet. Use jinko-trial for running trials.

jinko-reference

Create, inspect, download, and organize Jinkō reference PDFs and their extracts through the jinko-sdk. Use this skill whenever the user wants to upload a paper or source PDF to a Jinkō project, retrieve a reference PDF already in the project so it can be read, create textual highlights from a quoted passage, create rectangular or formula extracts, inspect a paper's bibliography or existing extracts, or use a project reference while reproducing a publication. Do not use it for literature search, model authoring, or data-table creation.

jinko-sdk-setup

Authenticate and configure access to a Jinkō project via the jinko-sdk. Use this skill whenever the user wants to connect to Jinkō, install the SDK, set up credentials or a .env file, verify API access, fail-fast check that a JINKO_API_KEY and JINKO_PROJECT_ID work, or debug ConfigurationError, AuthenticationError, or AuthorizationError from the SDK. Do not use this skill for creating models, vpops, protocols, output sets, or trials.

jinko-solution-and-product-guide

The jinko-solution-and-product-guide skill provides users with clear, concise information about solutions (services capabilities) and product features in jinko to solve the users scientific and modeling objectives. Use this skill whenever you need guidance on finding models in the library to help get a fast start or understand jinko features to accelerate your integrated modeling strategy.