NGS Analysis Workbench
ChatGPT pluginAnalyze sequencing data
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| 3 | #955 | 118places up | |
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A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and interpret completed results from file-backed evidence.
Example prompts
- “run a FastQC and Salmon QC on a public RNA-seq dataset and provide an interpretation of the results.”
- “run a scRNA-seq analysis with STARsolo on a public dataset and provide an interpretation of the results.”
- “run a NGS analysis on my sequencing data in my project.”
Skills
design-ngs-analysis
Translate a biological question or scientific outcome into a defensible NGS analysis plan. Use to define experimental units, groups, covariates, contrasts, endpoints, references, validity gates, evidence needs, methods, or supportable claims before choosing an executable workflow.
ngs-analysis-workbench
Orchestrate an NGS analysis journey across understanding data, designing an analysis, running an approved workflow, and understanding results. Use for capability questions, broad or ambiguous requests, guided starts, public demos, resume requests, or work spanning multiple journey segments.
run-ngs-analysis
Make an NGS analysis executable through live workflow discovery, readiness, immutable compound planning, native execution approval, monitoring, cancellation, and recovery. Use to bind an implementation, prepare or execute a plan, or operate a durable run.
understand-ngs-data
Understand an NGS starting point from raw reads, matrices, metadata, references, prior plans, runs, or results. Use when the user asks what data exists, how files and samples relate, whether inputs are usable, what is missing, or which analyses they could support.
understand-ngs-results
Interpret completed, partial, failed, blocked, or historical NGS analyses from their observed assay, endpoint, method, lifecycle, and verified output evidence. Use for FASTQ QC, demultiplexing, RNA-seq, DNA variants, epigenomics, or microbiome workflows, including custom implementations, without inventing unsupported claims.
- Categories
- Sign-in
- On Install
- Capabilities
- Interactive, Read, Write
- Availability
- Available
- Version
- 0.2.18
- Keywords
- ngs, sequencing, bioinformatics, fastq, rnaseq, scrnaseq, pipeline-routing, snakemake, nextflow, nf-core
- Created
- August 3, 2026
- More info
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