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Biological Sequence & Alignment Viewer

ChatGPT plugin

Inspect, analyze, and compare biological sequences and alignments in Codex.

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#2540of 7,03381places up24h187places up7d
#197#984#1,771#2,558Sep 18Sep 24Sep 30Oct 6Oct 12Oct 17

Rank in Scientific research

#13of 31024h07d
#12#13#14Sep 18Sep 24Sep 30Oct 6Oct 12Oct 17

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Scientific research13th of 31 by placement
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11Boltz#1916108places down
12Molecular Structure Viewer#2151371places up
13Biological Sequence & Alignment ViewerThis page#2540187places up
14NVIDIA BioNeMo Agent Toolkit#28922,317places up
15Slide Viewer#298443places down

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Biological Sequence & Alignment Viewer helps you inspect, analyze, safely edit, and compare FASTA, GenBank, EMBL, FASTQ, multiple sequence alignments, Sanger ABIF/SCF traces, and supported SnapGene DNA files. Navigate linear or circular records, manage annotations, translate with the right genetic code, find ORFs, explore primers and restriction digests, inspect measured chromatogram signals, align or edit copies, build graphical guide trees, load mapped variant/read evidence, export reproducible artifacts, restore sessions, and ask follow-up questions grounded in authoritative live viewer state. Unsupported binary revisions and source metadata are reported explicitly.

Example prompts

  • “Fetch ENA DRR037765 first 500 reads to active workspace; open and report live length range, GC, Q30, and subset provenance”
  • “Fetch UniProt P01116/P01111/P01112 alignment; map conserved motifs to KRAS, compute distances/tree, publish Newick to workspace”
  • “Fetch NCBI NC_001416.1 to active workspace; open it, map cI to OR1–OR3, and translate cI with code 11”

Skills

  • biological-sequence-viewer

    Open, inspect, analyze, safely edit copies of, and export local biological sequences and alignments in Codex's interactive workbench. Use for FASTA/FASTQ, GenBank/EMBL, MSA formats, ABIF/SCF chromatograms, SnapGene DNA, annotations, variants, or regional read evidence.

Categories
Made by
OpenAI · Website
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On Install
Capabilities
Interactive, Read, Write
Availability
Available
Version
0.1.52
Keywords
sequence, alignment, msa, fasta, fastq, genbank, embl, snapgene, sanger, abif, scf, a3m, stockholm, bioinformatics
Created
August 6, 2026
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