Molecular Structure Viewer
ChatGPT pluginVisualize and interact with molecular structures in Codex.
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Scientific research12th of 31 by placement
| # | Plugin | Position | 7d |
|---|---|---|---|
| 10 | #1758 | 388places up | |
| 11 | #1916 | 108places down | |
| 12 | #2151 | 371places up | |
| 13 | #2540 | 187places up | |
| 14 | #2892 | 2,317places up |
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Molecular Structure Viewer provides a compact Select, Analyze, Compare, Related data, Style, Animate, and Export workbench over Mol*. Use one revisioned atom-level query and scene contract across the UI and Codex to measure geometry, browse source-relative molecular companions, inspect contacts and density, compare aligned structures, style independent layers, play trajectories, restore named scenes and durable digest-bound projects, export provenance-rich results, and render publication images or editable presentation movies.
Example prompts
- “Open RCSB 1YCR once; analyze 4 Å MDM2–p53 contacts and buried area, label p53 Phe19/Trp23/Leu26, and report methods.”
- “Open RCSB 4AKE once; add 1AKE to the same viewer, align chain A, color teal/magenta, show AP5, and report RMSD/TM-scores.”
- “Open RCSB 1EMA once; style and label its chromophore; save a versioned 1600×1200 PNG to structure-viewer/gfp.png with sidecar.”
Skills
structure-viewer
Open, query, analyze, compare, style, animate, and render local molecular structures in Codex's interactive molecular workspace powered by Mol*. Use for PDB, CIF/mmCIF and their gzip/BGZF variants, MOL/SDF/MOL2, PQR/PDBQT, GRO/XYZ, molecular objects, residue exposure, density maps, and topology-plus-trajectory workflows.
- Categories
- Sign-in
- On Install
- Capabilities
- Interactive, Read, Write
- Availability
- Available
- Version
- 0.1.95
- Keywords
- structure, pdb, cif, mmcif, mol, sdf, mol2, pqr, pdbqt, gro, xyz, molstar, protein, ligand, molecule, bioinformatics, rendering, alignment, animation, movie, png, mp4, density, trajectory, analysis
- Created
- August 6, 2026
- More info
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